References for Interval Paper

  1. Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution, Yun S. Song, Yufeng Wu and Dan Gusfield, Bioinformatics 2005 21(Suppl 1): i413-i422.
  2. A linear-time algorithm for the perfect phylogeny haplotyping (PPH) problem, Zhihong Ding, Vladimir Filkov, Dan Gusfield. Journal of Computational Biology. 2006, 13(2): 522-553.
  3. Inference about Recombination from Haplotype Data: Lower Bounds and Recombination Hotspots, Vineet Bafna and Vikas Bansal, Journal of Computational Biology. 2006, 13(2): 501-521.
  4. Perfect phylogeny and haplotype assignment, E. Halperin and R. M. Karp, RECOMB ’04.
  5. Whole genome association mapping by incompatibilities and local perfect phylogenies, Thomas Mailund, Søren Besenbacher, and Mikkel H Schierup, BMC Bioinformatics 2006, 7:454
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